Run AmpliHLA

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Data type: Amplicons1 RNA-Seq2 Exome-Seq2

1 Reads will be de-multiplexed, clustered, filtered by the AmpliSAS algorithm and at the end mapped to HLA references as explained by Sebastian et al. [Pubmed]
2 Reads will be first mapped to HLA references and the best-mapping alleles will be selected for haplotypes with a modified version of the Boegel et al. protocol [Pubmed]

Analysis parameters will vary depending of the chosen typing method.

AmpliHLA has been developed for research purposes and it is not intended for human diagnosis.

I develope this tool in my free time without any academic/commercial support, I will be grateful if you want to contribute:


Your use of any of these tools is at your own risk. We do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. By visiting the site, you accept our use of cookies and you accept that your data and results will be stored in our server.