Run AmpliTCR

Run name:
Email (optional):
Sequence file: FASTA/FASTQ (compressed or uncompressed) without spaces, parenthesis or other special symbols in the name
Max. 500 MB Download example
At least one segment pattern should be specified.
Variable segment pattern:
Joining segment pattern:
Constant segment pattern:
PROSITE format syntax rules.

Additional options:

Number of reads to process: Maximum number of sequences/reads to be processed.
TCR constant segment primer: Only sequences containing the primer will be processed.
Cluster TCR segment sequencing errors with the following algorithm: If selected this option, TCR segment trimmed sequences will be clustered to remove sequencing errors and discover alleles.
Print protein sequences: If selected this option, TCR segment translated sequences will be printed in additional FASTA files.


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